Create PDF report of annotations — create_annotation_report • XCMSAnnotator

Takes a MatchedSpectra and writes a PDF report. Certain info shound be contained in the reference spectra...

Usage

create_annotation_report(
  matched_spectra,
  outname = "annotate_report",
  outpath = ".",
  skip_latex_dependency_check = FALSE,
  title = "Annotation project",
  author = "Meeeee!",
  only_matches = FALSE
)

Arguments

matched_spectra: MatchedSpectra objects with database matches.
outname: Filename for the PDF.
outpath: Folder to write the result PDF to.
skip_latex_dependency_check: If the check for LaTex and Latex packages should be skipped.
title: Set the title of the report.
author: Set the author of the report.
only_matches: Return only matched compounds in the overview list.

Value

A PDF written to disk